SangerAlignment Level

SangerContig Level

SangerRead Level

Basic Information:

  • Output Directory : C:_ACHLO006-09/Achl_ACHLO006-09_1_F
  • Input Directory : C:/Users/dell/AppData/Local/R/win-library/4.2/sangeranalyseR/extdata/Allolobophora_chlorotica/ACHLO/.
  • Input Filename : Achl_ACHLO006-09_1_F.ab1
  • Read Feature : Forward Read

DNA Seqence

Primary Sequence

Secondary Sequence

Phred Quality Scores

Amino Acids Sequence

Amino Acids Sequence frameshit 0

Amino Acids Sequence frameshit 1

Amino Acids Sequence frameshit 2

Quality Trimming

  • Trimming Method: Method 1 ‘Logarithmic Scale Trimming’
  • M1 Trimming Cutoff: 1e-04
  • Raw Sequence Length: 702
  • Trimmed Sequence Length: 461
  • Trimmed Start Point: 16
  • Trimmed End Point: 477
  • Raw Mean Quality Score: 52.8760684
  • Trimmed Mean Quality Score: 58.2104121
  • Raw Min Quality Score: 1
  • Trimmed Min Quality Score: 13
  • Remaining Read Ratio: 65.67 %

Chromatogram

  • Signal Ratio Cutoff: 0.33
  • Base Number Per Row: 100
  • Height Per Row: 200
  • Show Trimmed Region: TRUE 
## Chromatogram saved to C:\Users\dell\AppData\Local\Temp\RtmpWKmTTv\SangerAlignment\Achl_ACHLO006-09/Achl_ACHLO006-09_1_F/Chromatogram.pdf in the current working directory

Click Here to Open Chromatogram in New Page




Back to ‘SangerContig’ Report